Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024961-SRR6024962-SRR6024963-SRR6024964/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  418,690,704
 Normal Paired: 400,358,985 (95.62%)
 Chimeric Paired: 12,078,760 (2.88%)
 Chimeric Ambiguous: 1,413,851 (0.34%)
 Unmapped: 4,839,108 (1.16%)
 Ligation Motif Present: 145,902 (0.03%)
Alignable (Normal+Chimeric Paired): 412,437,745 (98.51%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-06T05:58:09,324]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 88,132,781 (21.05%)
PCR Duplicates: 324,304,964 (77.46%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 88,997,222
Intra-fragment Reads: 42,549,849 (10.16% / 48.28%)
Below MAPQ Threshold: 16,259,989 (3.88% / 18.45%)
Hi-C Contacts: 29,322,943 (7.00% / 33.27%)
 Ligation Motif Present: 21,222  (0.01% / 0.02%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 24%
Inter-chromosomal: 6,551,364  (1.56% / 7.43%)
Intra-chromosomal: 22,771,579  (5.44% / 25.84%)
Short Range (<20Kb): 15,066,062  (3.60% / 17.09%)
Long Range (>20Kb): 7,705,431  (1.84% / 8.74%)